function [data, auxData, metaData, txtData, weights] = mydata_Ammomanes_deserti
%% set metaData
metaData.phylum     = 'Chordata'; 
metaData.class      = 'Aves'; 
metaData.order      = 'Passeriformes'; 
metaData.family     = 'Alaudidae';
metaData.species    = 'Ammomanes_deserti'; 
metaData.species_en = 'Desert lark'; 

metaData.ecoCode.climate = {'BWh'};
metaData.ecoCode.ecozone = {'THp', 'TPa'};
metaData.ecoCode.habitat = {'0iTi', '0iTs', '0iTg'};
metaData.ecoCode.embryo  = {'Tnsf'};
metaData.ecoCode.migrate = {};
metaData.ecoCode.food    = {'biCi', 'xiHs', 'xiHl'};
metaData.ecoCode.gender  = {'Dg'};
metaData.ecoCode.reprod  = {'O'};

metaData.T_typical  = C2K(41.6); % K, body temp
metaData.data_0     = {'ab'; 'ax'; 'ap'; 'aR'; 'am'; 'Wwb'; 'Wwi'; 'Ri'}; 
metaData.data_1     = {'t-Ww'}; 

metaData.COMPLETE = 2.5; % using criteria of LikaKear2011

metaData.author   = {'Bas Kooijman'};    
metaData.date_subm = [2018 10 10];              
metaData.email    = {'bas.kooijman@vu.nl'};            
metaData.address  = {'VU University Amsterdam'};   

metaData.author_mod_1 = {'Bas Kooijman'};    
metaData.date_mod_1   = [2022 11 16];              
metaData.email_mod_1  = {'bas.kooijman@vu.nl'};            
metaData.address_mod_1= {'VU University Amsterdam'};   

metaData.author_mod_2   = {'Bas Kooijman', 'Starrlight Augustine'};    
metaData.date_mod_2     = [2023 07 08];              
metaData.email_mod_2    = {'bas.kooijman@vu.nl'};            
metaData.address_mod_2  = {'VU University, Amsterdam'};   

metaData.curator     = {'Starrlight Augustine'};
metaData.email_cur   = {'starrlight@tecnico.ulisboa.pt'}; 
metaData.date_acc    = [2023 07 08];

%% set data
% zero-variate data

data.ab = 10.5;      units.ab = 'd';    label.ab = 'age at birth';             bibkey.ab = 'Wiki';   
  temp.ab = C2K(36); units.temp.ab = 'K'; label.temp.ab = 'temperature';
data.tx = 10.1;        units.tx = 'd';    label.tx = 'time since birth at fledging'; bibkey.tx = 'ShkeSafr1992';   
  temp.tx = C2K(41.6); units.temp.tx = 'K'; label.temp.tx = 'temperature';
  comment.tx = 'Wiki: 18 to 20 d';
data.tp = 30.3;        units.tp = 'd';    label.tp = 'time since birth at puberty'; bibkey.tp = 'guess';   
  temp.tp = C2K(41.6); units.temp.tp = 'K'; label.temp.tp = 'temperature';
  comment.tp = 'Wiki: 18 to 20 d';
data.tR = 365;       units.tR = 'd';    label.tR = 'time since birth at 1st brood';  bibkey.tR = 'guess';
  temp.tR = C2K(41.6); units.temp.tR = 'K'; label.temp.tR = 'temperature';
data.am = 11.6*365;   units.am = 'd';    label.am = 'life span';                bibkey.am = 'guess';   
  temp.am = C2K(41.6); units.temp.am = 'K'; label.temp.am = 'temperature'; 

data.Wwb = 2.5;      units.Wwb = 'g';   label.Wwb = 'wet weight at birth';     bibkey.Wwb = 'ShkeSafr1992';
  comment.Wwb = 'Harr1975: egg length 2.33 cm, width 1.65 cm, weight pi/6*2.33*1.65^2=3.32 g';
data.Wwi = 22;     units.Wwi = 'g';   label.Wwi = 'ultimate wet weight';     bibkey.Wwi = 'ShkeSafr1992';
  comment.Wwi = 'Wiki: 37 to 55 g';

data.Ri  = 2 * 3/365;    units.Ri  = '#/d'; label.Ri  = 'maximum reprod rate';     bibkey.Ri  = 'ShkeSafr1992';   
  temp.Ri = C2K(41.6); units.temp.Ri = 'K'; label.temp.Ri = 'temperature';
  comment.Ri = '2 to 4 eggs per clutch, 2 clutches per yr';
  
% uni-variate data
% time-weight
data.tW = [ ... % time since birth (d), wet weight (g)
0.985	2.514
0.986	2.404
1.937	3.934
1.938	3.770
2.995	6.011
2.996	5.355
3.909	8.033
3.943	8.907
4.965	10.765
4.967	10.109
5.949	13.770
5.950	13.497
6.953	15.956
6.972	15.410
7.960	16.776
7.994	17.541
8.943	19.945
8.985	17.596
10.026	19.126];
data.tW(:,1) = data.tW(:,1) - 1; % set origin at birth
units.tW   = {'d', 'g'};  label.tW = {'time since birth', 'wet weight'};  
temp.tW    = C2K(41.6);  units.temp.tW = 'K'; label.temp.tW = 'temperature';
bibkey.tW  = 'ShkeSafr1992';

%% set weights for all real data
weights = setweights(data, []);
weights.tW = weights.tW * 2;

%% set pseudodata and respective weights
[data, units, label, weights] = addpseudodata(data, units, label, weights);
weights.psd.k_J = 0; weights.psd.k = 1;

%% pack auxData and txtData for output
auxData.temp = temp;
txtData.units = units;
txtData.label = label;
txtData.bibkey = bibkey;
txtData.comment = comment;

%% Discussion points
D1 = 'Body temperatures are guessed';
D2 = 'mod_1: v reduced';
D3 = 'mod_2: Pseudo-data point k is used, rather than k_J; Data set tp and parameter t_R are added, the latter replacing clutch interval t_N. Postnatal T is based on PrinPres1991, see <a href="https://debtool.debtheory.org/lib/pet/html/get_T_Aves.html">get_T_Aves</a>. See further the <a href="https://debportal.debtheory.org/docs/Revision.html">revision page, theme puberty</a>';
metaData.discussion = struct('D1',D1, 'D2',D2, 'D3',D3);

%% Links
metaData.links.id_CoL = 'CTQ6'; % Cat of Life
metaData.links.id_ITIS = '558553'; % ITIS
metaData.links.id_EoL = '45513645'; % Ency of Life
metaData.links.id_Wiki = 'Ammomanes_deserti'; % Wikipedia
metaData.links.id_ADW = 'Ammomanes_deserti'; % ADW
metaData.links.id_Taxo = '56275'; % Taxonomicon
metaData.links.id_WoRMS = ''; % WoRMS
metaData.links.id_avibase = 'A977348D32FB435E'; % avibase
metaData.links.id_birdlife = 'desert-lark-ammomanes-deserti'; % birdlife
metaData.links.id_AnAge = ''; % AnAge

%% References
bibkey = 'Wiki'; type = 'Misc'; bib = ...
'howpublished = {\url{http://en.wikipedia.org/wiki/Ammomanes_deserti}}';
metaData.biblist.(bibkey) = ['''@', type, '{', bibkey, ', ' bib, '}'';'];
%
bibkey = 'Kooy2010'; type = 'Book'; bib = [ ...  % used in setting of chemical parameters and pseudodata
'author = {Kooijman, S.A.L.M.}, ' ...
'year = {2010}, ' ...
'title  = {Dynamic Energy Budget theory for metabolic organisation}, ' ...
'publisher = {Cambridge Univ. Press, Cambridge}, ' ...
'pages = {Table 4.2 (page 150), 8.1 (page 300)}, ' ...
'howpublished = {\url{../../../bib/Kooy2010.html}}'];
metaData.biblist.(bibkey) = ['''@', type, '{', bibkey, ', ' bib, '}'';'];
%
bibkey = 'ShkeSafr1992'; type = 'Article'; bib = [ ... 
'author = {Y. Shkedy and U. N. Safriel}, ' ... 
'doi = {10.1111/j.1474-919X.1992.tb03809.x}, ' ...
'year = {1992}, ' ...
'title = {Nest predation and nestling growth rate of two lark species in the Negev Desert, Israel}, ' ...
'journal = {Ibis}, ' ...
'volume = {134}, ' ...
'pages = {268--272}'];
metaData.biblist.(bibkey) = ['''@', type, '{', bibkey, ', ' bib, '}'';'];
%
bibkey = 'Harr1975'; type = 'Book'; bib = [ ...  % used in setting of chemical parameters and pseudodata
'author = {C. Harrison}, ' ...
'year = {1975}, ' ...
'title  = {A field guide to the nests, eggs and nestlings of Britsh and European birds}, ' ...
'publisher = {Collins, London}'];
metaData.biblist.(bibkey) = ['''@', type, '{', bibkey, ', ' bib, '}'';'];
%
bibkey = 'PrinPres1991'; type = 'Article'; bib = [ ... 
'doi = {10.1016/0300-9629(91)90122-S}, ' ...
'author = {R. Prinzinger and A.Pre{\ss}mar and E. Schleucher}, ' ... 
'year = {1991}, ' ...
'title = {Body temperature in birds}, ' ...
'journal = {Comp. Biochem. Physiol.}, ' ...
'volume = {99A(4)}, ' ...
'pages = {499-506}'];
metaData.biblist.(bibkey) = ['''@', type, '{', bibkey, ', ' bib, '}'';'];

