function [data, auxData, metaData, txtData, weights] = mydata_Basiliscus_basiliscus %% set metaData metaData.phylum = 'Chordata'; metaData.class = 'Reptilia'; metaData.order = 'Squamata'; metaData.family = 'Corytophanidae'; metaData.species = 'Basiliscus_basiliscus'; metaData.species_en = 'Common basilisk'; metaData.ecoCode.climate = {'Af', 'Am'}; metaData.ecoCode.ecozone = {'THn'}; metaData.ecoCode.habitat = {'0iTa'}; metaData.ecoCode.embryo = {'Tns'}; metaData.ecoCode.migrate = {}; metaData.ecoCode.food = {'biCi'}; metaData.ecoCode.gender = {'Dg'}; metaData.ecoCode.reprod = {'O'}; metaData.T_typical = C2K(28); % K, body temp metaData.data_0 = {'ab'; 'ap'; 'am'; 'Lp'; 'Li'; 'Wwb'; 'Wwi'; 'Ri'}; metaData.data_1 = {'t-L'}; metaData.COMPLETE = 2.5; % using criteria of LikaKear2011 metaData.author = {'Bas Kooijman'}; metaData.date_subm = [2019 05 15]; metaData.email = {'bas.kooijman@vu.nl'}; metaData.address = {'VU University, Amsterdam'}; metaData.curator = {'Starrlight Augustine'}; metaData.email_cur = {'starrlight@akvaplan.niva.no'}; metaData.date_acc = [2019 05 15]; %% set data % zero-variate data data.ab = 3*30.5; units.ab = 'd'; label.ab = 'age at birth'; bibkey.ab = 'Wiki'; temp.ab = C2K(28); units.temp.ab = 'K'; label.temp.ab = 'temperature'; data.tp = 20*30.5; units.tp = 'd'; label.tp = 'time since birth at puberty'; bibkey.tp = 'Deve1978'; temp.tp = C2K(28); units.temp.tp = 'K'; label.temp.tp = 'temperature'; data.tpm = 16*30.5; units.tpm = 'd'; label.tpm = 'time since birth at puberty'; bibkey.tpm = 'Deve1978'; temp.tpm = C2K(28); units.temp.tpm = 'K'; label.temp.tpm = 'temperature'; data.am = 7*365; units.am = 'd'; label.am = 'life span'; bibkey.am = 'Wiki'; temp.am = C2K(28); units.temp.am = 'K'; label.temp.am = 'temperature'; data.Lp = 13.5; units.Lp = 'cm'; label.Lp = 'SVL at puberty for females'; bibkey.Lp = 'Deve1978'; data.Lpm = 13.0; units.Lpm = 'cm'; label.Lpm = 'SVL at puberty for males'; bibkey.Lpm = 'Deve1978'; data.Li = 15.9; units.Li = 'cm'; label.Li = 'ultimate SVL for females'; bibkey.Li = 'Deve1978'; data.Lim = 22.8; units.Lim = 'cm'; label.Lim = 'ultimate SVL for males'; bibkey.Lim = 'Deve1978'; data.Wwb = 2; units.Wwb = 'g'; label.Wwb = 'wet weight at birth'; bibkey.Wwb = 'Wiki'; data.Wwi = 160.1; units.Wwi = 'g'; label.Wwi = 'ultimate wet weight for females'; bibkey.Wwi = 'Deve1978'; data.Wwim = 416.5; units.Wwim = 'g'; label.Wwim = 'ultimate wet weight for males'; bibkey.Wwim = 'Deve1978'; data.Ri = 3.5*15/365; units.Ri = '#/d'; label.Ri = 'maximum reprod rate'; bibkey.Ri = 'Wiki'; temp.Ri = C2K(28); units.temp.Ri = 'K'; label.temp.Ri = 'temperature'; comment.Ri = '10 to 20 eggs per clutch: 3 to 4 clutches per yr'; % univariate data % time - length data data.tL_f = [ ... % age (month), SVL (am) 4.031 5.140 4.452 5.193 4.603 5.670 4.921 5.591 5.234 5.830 6.431 6.943 7.056 7.447 7.367 7.845 7.639 7.288 8.937 8.667 9.248 9.064 9.307 8.640 9.832 8.826 10.749 10.973 11.033 9.621 11.406 12.909 11.465 12.511 11.866 10.390 11.995 12.326 12.720 9.727 12.819 13.652 13.201 12.830 13.203 12.697 13.248 13.227 13.296 13.545 13.552 14.076 13.698 11.371 13.748 11.557 13.929 13.545 13.991 12.936 14.046 12.750 14.179 10.947 14.306 13.015 14.355 13.307 15.423 12.432 15.567 13.413 15.598 11.345 16.037 13.731 16.145 10.019 16.243 14.023 16.331 11.742 16.415 13.148 17.019 15.083 17.038 13.837 17.257 13.254 17.286 14.871 18.194 14.102 18.567 13.864 18.615 14.182 18.942 13.545 19.045 13.652 19.428 12.803 19.573 13.625 19.616 14.288 20.142 14.420 20.286 11.848 20.411 14.076 20.827 14.500 20.830 14.261 21.042 14.208 21.516 14.288 21.935 14.473 22.311 14.049 22.420 13.811 22.517 14.394 22.589 13.121 22.831 14.553 22.992 14.394 24.429 13.572 24.463 14.818 24.655 12.538 24.732 14.420 26.189 15.773 26.723 15.348 26.935 15.295 27.202 15.110 27.580 14.553 28.578 14.845 28.804 13.864 28.992 15.348 29.788 15.030 30.306 15.693 32.971 13.943 34.941 16.250 36.648 15.030 39.178 15.163 39.848 16.250 45.698 16.674]; data.tL_f(:,1) = 30.5 * data.tL_f(:,1); % convert month to d units.tL_f = {'d', 'cm'}; label.tL_f = {'time since birth', 'SVL'}; temp.tL_f = C2K(28); units.temp.tL_f = 'K'; label.temp.tL_f = 'temperature'; bibkey.tL_f = 'Deve1978'; comment.tL_f = 'Data for females'; %% set weights for all real data weights = setweights(data, []); weights.tL_f = 10 * weights.tL_f; %% set pseudodata and respective weights [data, units, label, weights] = addpseudodata(data, units, label, weights); %% pack auxData and txtData for output auxData.temp = temp; txtData.units = units; txtData.label = label; txtData.bibkey = bibkey; txtData.comment = comment; %% Discussion points D1 = 'Males are assumed to differ from females by {p_Am} only'; D2 = 'Temperatures are guessed'; metaData.discussion = struct('D1', D1, 'D2', D2); %% Links metaData.links.id_CoL = '68CY9'; % Cat of Life metaData.links.id_ITIS = '1056919'; % ITIS metaData.links.id_EoL = '795614'; % Ency of Life metaData.links.id_Wiki = 'Basiliscus_basiliscus'; % Wikipedia metaData.links.id_ADW = 'Basiliscus_basiliscus'; % ADW metaData.links.id_Taxo = '49095'; % Taxonomicon metaData.links.id_WoRMS = ''; % WoRMS metaData.links.id_ReptileDB = 'genus=Basiliscus&species=basiliscus'; % ReptileDB metaData.links.id_AnAge = ''; % AnAge %% References bibkey = 'Wiki'; type = 'Misc'; bib = ... 'howpublished = {\url{http://en.wikipedia.org/wiki/Basiliscus_basiliscus}}'; metaData.biblist.(bibkey) = ['''@', type, '{', bibkey, ', ' bib, '}'';']; % bibkey = 'Kooy2010'; type = 'Book'; bib = [ ... % used in setting of chemical parameters and pseudodata 'author = {Kooijman, S.A.L.M.}, ' ... 'year = {2010}, ' ... 'title = {Dynamic Energy Budget theory for metabolic organisation}, ' ... 'publisher = {Cambridge Univ. Press, Cambridge}, ' ... 'pages = {Table 4.2 (page 150), 8.1 (page 300)}, ' ... 'howpublished = {\url{../../../bib/Kooy2010.html}}']; metaData.biblist.(bibkey) = ['''@', type, '{', bibkey, ', ' bib, '}'';']; % bibkey = 'Deve1978'; type = 'Article'; bib = [ ... 'author = {Robert Wayne Van Devender}, ' ... 'year = {1978}, ' ... 'title = {GROWTH ECOLOGY OF A TROPICAL LIZARD, \emph{Basiliscus basiliscus}}, ' ... 'pages = {1031-1038}, ' ... 'volume = {59(5)}, ' ... 'journal = {Ecology}']; metaData.biblist.(bibkey) = ['''@', type, '{', bibkey, ', ' bib, '}'';'];