function [data, auxData, metaData, txtData, weights] = mydata_Callianira_antarctica %% set metaData metaData.phylum = 'Ctenophora'; metaData.class = 'Tentaculata'; metaData.order = 'Cydippida'; metaData.family = 'Mertensiidae'; metaData.species = 'Callianira_antarctica'; metaData.species_en = 'Antarctic comb jelly'; metaData.ecoCode.climate = {'ME'}; metaData.ecoCode.ecozone = {'MS'}; metaData.ecoCode.habitat = {'0iMp'}; metaData.ecoCode.embryo = {'Mp'}; metaData.ecoCode.migrate = {}; metaData.ecoCode.food = {'biPz'}; metaData.ecoCode.gender = {'Hh'}; metaData.ecoCode.reprod = {'O'}; metaData.T_typical = C2K(-1.5); % K, body temp metaData.data_0 = {'ap'; 'am';'Lp'; 'Li'; 'Wwb'; 'Wdi'}; metaData.data_1 = {'L-Wd'; 'L-WC'; 'L-WN'; 'Wd-JO'; 'Wd-JN'}; metaData.COMPLETE = 1.5; % using criteria of LikaKear2011 metaData.author = {'Starrlight Augustine'}; metaData.date_subm = [2012 12 19]; metaData.email = {'starrlight.augustine@akvaplan.niva.no'}; metaData.address = {'Akvaplan-niva AS, Fram Centre, P.O. Box 6606 Langnes, 9296 Tromsø, Norway'}; metaData.author_mod_1 = {'Starrlight Augustine'}; metaData.date_mod_1 = [2013 06 20]; metaData.email_mod_1 = {'starrlight.augustine@akvaplan.niva.no'}; metaData.address_mod_1 = {'Akvaplan-niva AS, Fram Centre, P.O. Box 6606 Langnes, 9296 Tromsø, Norway'}; metaData.author_mod_2 = {'Bas Kooijman'}; metaData.date_mod_2 = [2015 11 03]; metaData.email_mod_2 = {'bas.kooijman@vu.nl'}; metaData.address_mod_2 = {'VU University, Amsterdam'}; metaData.author_mod_3 = {'Bas Kooijman'}; metaData.date_mod_3 = [2019 08 18]; metaData.email_mod_3 = {'bas.kooijman@vu.nl'}; metaData.address_mod_3 = {'VU University, Amsterdam'}; metaData.curator = {'Starrlight Augustine'}; metaData.email_cur = {'starrlight.augustine@akvaplan.niva.no'}; metaData.date_acc = [2019 08 18]; %% set data % zero-variate data data.tp = 200; units.tp = 'd'; label.tp = 'time since birth at puberty'; bibkey.tp = 'guess'; temp.tp = C2K(-1.5); units.temp.tp = 'K'; label.temp.tp = 'temperature'; data.am = 365; units.am = 'd'; label.am = 'life span'; bibkey.am = 'guess'; temp.am = C2K(-1.5); units.temp.am = 'K'; label.temp.am = 'temperature'; data.Lp = 2; units.Lp = 'cm'; label.Lp = 'total length at puberty'; bibkey.Lp = 'guess'; data.Li = 9.8; units.Li = 'cm'; label.Li = 'ultimate total length'; bibkey.Li = 'ScolDaly2006'; data.Wwb = 1.8e-4; units.Wwb = 'cm'; label.Wwb = 'wet weight at birth'; bibkey.Wwb = 'guess'; comment.Wwb = 'based on egg diameter 700 mum: pi/6*0.07^3'; data.Wdi = 1.366; units.Wdi = 'g'; label.Wdi = 'ultimate dry weight'; bibkey.Wdi = 'ScolDaly2006'; % uni-variate data % weight-respiration data data.WdJO = [ ... dry mass. mg mu l O2/hr 2.831 0.384 ; 24.615 4.335 ; 38.576 10.644 ; 71.093 11.217 ; 105.821 16.348 ; 114.796 14.939 ; 170.921 28.01 ; 172.854 72.671 ; 569.516 94.885 ; 1027.882 62.639 ]; units.WdJO = {'mg', 'mul O2/h'}; label.WdJO = {'dry weight', 'O_2 consumption'}; temp.WdJO = C2K(-0.5); units.temp.WdJO = 'K'; label.temp.WdJO = 'temperature'; bibkey.WdJO = 'ScolDaly2006'; % % weight-excretion data data.WdJN = [ ... dry mass. mg mu mol N/hr 2.752 0.006 ; 24.272 0.019 ; 37.91 0.042 ; 69.724 0.082 ; 104.903 0.059 ; 113.54 0.133 ; 167.474 0.079 ; 171.004 0.068 ; 566.676 0.274 ; 1028.783 0.044 ]; units.WdJN = {'mg', 'mumol N/h'}; label.WdJN = {'dry weight', 'NH_3 excretion'}; temp.WdJN = C2K(-0.5); units.temp.WdJN = 'K'; label.temp.WdJN = 'temperature'; bibkey.WdJN = 'ScolDaly2006'; % length-weight data LWdCN = [ ...TL (mm) DW (mg) Total C (mg) Total N (mg) 59.8 366.5 32.04 6.82 35 202.3 22.57 4.82 47.9 279.1 21.30 5.13 77.6 488.8 36.33 7.56 45 272.7 22.54 5.19 83.6 757.6 90.96 17.58 39.6 169.5 13.23 3.31 37.2 149.9 10.49 2.53 10 8.1 0.49 0.13 16 12.5 1.21 0.31 17 18.8 2.31 0.24 20 49.9 4.67 0.70 12.5 4.9 0.07 0.01 21 25.8 3.16 0.56 40 174.2 24.08 4.98 43 264.0 29.70 6.37 14 14.6 1.87 0.26 38 173.0 14.74 3.52 23 38.7 3.53 0.87 50 206.2 33.21 7.85 22 46.5 3.77 0.94 23 82.7 3.99 0.86 85 1049.1 130.72 29.44 73 598.6 60.28 13.55 8.5 2.8 0.05 0.01 22 24.6 1.45 0.35 28 70.5 4.48 1.19 34 107.5 5.60 1.54 28 115.2 12.06 3.12 98 1365.6 340.21 60.44 28 101.7 6.49 1.50 61 564.0 82.09 18.17]; data.LWd = LWdCN(:,[1 2]); units.LWd = {'mm', 'mg'}; label.LWd = {'total length', 'dry weight'}; bibkey.LWd = 'ScolDaly2006'; comment.LWd = 'Raw data from the study provided in personal communication 11 june 2013'; % data.LWC = LWdCN(:,[1 3]); units.LWC = {'mm', 'mg'}; label.LWC = {'total length', 'total C weight'}; bibkey.LWC = 'ScolDaly2006'; comment.LWC = 'Raw data from the study provided in personal communication 11 june 2013'; % data.LWN = LWdCN(:,[1 4]); units.LWN = {'mm', 'mg'}; label.LWN = {'total length', 'total N weight'}; bibkey.LWN = 'ScolDaly2006'; comment.LWN = 'Raw data from the study provided in personal communication 11 june 2013'; %% set weights for all real data weights = setweights(data, []); %% set pseudodata and respective weights [data, units, label, weights] = addpseudodata(data, units, label, weights); %% pack auxData and txtData for output auxData.temp = temp; txtData.units = units; txtData.label = label; txtData.bibkey = bibkey; txtData.comment = comment; %% Discussion points D1 = 'Chemical pars are assumped to relate to ash-free dry mass; MaleFaga1993 report ash free dry mass over dry mass ratio of 0.263 - 0.297 with mean 0.279, which makes del_W = 3.5842'; D2 = 'mod_3: guessed data added to allow parameter estimation; kappa fixed at 0.95 in absence of reproduction data'; metaData.discussion = struct('D1', D1, 'D2', D2); %% Facts F1 = 'C. antarctica feeds mainly on copepods'; metaData.bibkey.F1 = 'SeJoScol2004'; F2 = 'Is found is Magellan Strait and the Antarctic Ocean; C. antarctica egested little else than clear pieces of disarticulated exoskeleton'; metaData.bibkey.F2 = 'ScolDaly2006'; F3 = 'The similarity in feeding incidence between autumn and winter, despite a large seasonal variability in prey abundance, suggests that other factors, such as prey patchiness, may significantly influence feeding'; metaData.bibkey.F3 = 'ScolDaly2006'; F4 = 'Hermaphrodite'; metaData.bibkey.F4 = 'Wiki'; metaData.facts = struct('F1',F1,'F2',F2,'F3',F3,'F4',F4); %% Links metaData.links.id_CoL = '303f7a8417f250f9b9d1cbc77fc060cf'; % Cat of Life metaData.links.id_EoL = '45502494'; % Ency of Life metaData.links.id_Wiki = 'Callianira_(ctenophore)'; % Wikipedia metaData.links.id_Taxo = '290691'; % Taxonomicon metaData.links.id_WoRMS = '265170'; % WoRMS %% References bibkey = 'Wiki'; type = 'Misc'; bib = ... 'howpublished = {\url{http://en.wikipedia.org/wiki/Callianira_antarctica}}'; metaData.biblist.(bibkey) = ['''@', type, '{', bibkey, ', ' bib, '}'';']; % bibkey = 'Kooy2010'; type = 'Book'; bib = [ ... % used in setting of chemical parameters and pseudodata 'author = {Kooijman, S.A.L.M.}, ' ... 'year = {2010}, ' ... 'title = {Dynamic Energy Budget theory for metabolic organisation}, ' ... 'publisher = {Cambridge Univ. Press, Cambridge}, ' ... 'pages = {Table 4.2 (page 150), 8.1 (page 300)}, ' ... 'howpublished = {\url{http://www.bio.vu.nl/thb/research/bib/Kooy2010.html}}']; metaData.biblist.(bibkey) = ['''@', type, '{', bibkey, ', ' bib, '}'';']; % bibkey = 'MaleFaga1993'; type = 'Article'; bib = [ ... 'author = {Malej, A. and Faganeli, J. and Pezdic, J.}, ' ... 'year = {1993}, ' ... 'title = {Stable isotope and biochemical fractionation in the marine pelagic food chain: the jellyfish \emph{Pelagia noctiluca} and net zooplantkton.}, ' ... 'journal = {Marine Biology}, ' ... 'volume = {116}, ' ... 'pages = {565--570}']; metaData.biblist.(bibkey) = ['''@', type, '{', bibkey, ', ' bib, '}'';']; % bibkey = 'ScolDaly2006'; type = 'Article'; bib = [ ... 'author = {Scolardi, K. M. and Daly, K. and Pakhomov, E. A. and Torres, J. J.}, ' ... 'year = {2006}, ' ... 'title = {Feeding ecology and metabolism of the {A}ntarctic cydippid ctenophore \emph{Callianira antarctica}}, ' ... 'journal = {Marine Ecological Progress Series}, ' ... 'howpublished = {\url{http://www.int-res.com/articles/meps2006/317/m317p111.pdf}}, ' ... 'volume = {317}, ' ... 'pages = {111-–126}']; metaData.biblist.(bibkey) = ['''@', type, '{', bibkey, ', ' bib, '}'';']; % bibkey = 'SeJoScol2004'; type = 'Article'; bib = [ ... 'author = {Se-Jong, J. and Scolardi, K. M. and Daly, K. and Harvey, H. R.}, ' ... 'year = {2004}, ' ... 'title = {Understanding the trophic role of the {A}ntarctic ctenophore \emph{Callianira antarctica}, using lipid biomarkers}, ' ... 'journal = {Polar Biology}, ' ... 'volume = {27}, ' ... 'pages = {782--792}']; metaData.biblist.(bibkey) = ['''@', type, '{', bibkey, ', ' bib, '}'';']; % bibkey = 'WORMS'; type = 'Misc'; bib = ... 'howpublished = {\url{http://www.marinespecies.org/aphia.php?p=taxdetails&id=265170}}'; metaData.biblist.(bibkey) = ['''@', type, '{', bibkey, ', ' bib, '}'';'];