function [data, auxData, metaData, txtData, weights] = mydata_Turdus_migratorius
%% set metaData
metaData.phylum = 'Chordata';
metaData.class = 'Aves';
metaData.order = 'Passeriformes';
metaData.family = 'Turdidae';
metaData.species = 'Turdus_migratorius';
metaData.species_en = 'American robin';
metaData.ecoCode.climate = {'BSk', 'Cfa', 'Dfa', 'Dfb', 'Dfc'};
metaData.ecoCode.ecozone = {'THn'};
metaData.ecoCode.habitat = {'0iTh', '0iTf'};
metaData.ecoCode.embryo = {'Tnpf'};
metaData.ecoCode.migrate = {'Ml'};
metaData.ecoCode.food = {'biCi', 'xiHs'};
metaData.ecoCode.gender = {'Dg'};
metaData.ecoCode.reprod = {'O'};
metaData.T_typical = C2K(41.6); % K, body temp
metaData.data_0 = {'ab'; 'ax'; 'ap'; 'aR'; 'am'; 'Wwb'; 'Wwi'; 'Ri'};
metaData.data_1 = {'t-Ww'};
metaData.COMPLETE = 2.5; % using criteria of LikaKear2011
metaData.author = {'Bas Kooijman'};
metaData.date_subm = [2017 12 17];
metaData.email = {'bas.kooijman@vu.nl'};
metaData.address = {'VU University Amsterdam'};
metaData.author_mod_1 = {'Bas Kooijman'};
metaData.date_mod_1 = [2022 11 24];
metaData.email_mod_1 = {'bas.kooijman@vu.nl'};
metaData.address_mod_1 = {'VU University Amsterdam'};
metaData.author_mod_2 = {'Bas Kooijman', 'Starrlight Augustine'};
metaData.date_mod_2 = [2023 07 10];
metaData.email_mod_2 = {'bas.kooijman@vu.nl'};
metaData.address_mod_2 = {'VU University, Amsterdam'};
metaData.curator = {'Starrlight Augustine'};
metaData.email_cur = {'starrlight@tecnico.ulisboa.pt'};
metaData.date_acc = [2023 07 10];
%% set data
% zero-variate data
data.ab = 14; units.ab = 'd'; label.ab = 'age at birth'; bibkey.ab = 'Brub1988';
temp.ab = C2K(36); units.temp.ab = 'K'; label.temp.ab = 'temperature';
data.tx = 13; units.tx = 'd'; label.tx = 'time since birth at fledging'; bibkey.tx = 'Brub1988';
temp.tx = C2K(41.6); units.temp.tx = 'K'; label.temp.tx = 'temperature';
data.tp = 39; units.tp = 'd'; label.tp = 'time since birth at puberty'; bibkey.tp = 'guess';
temp.tp = C2K(41.6); units.temp.tp = 'K'; label.temp.tp = 'temperature';
data.tR = 365; units.tR = 'd'; label.tR = 'time since birth at 1st brood'; bibkey.tR = 'Brub1988';
temp.tR = C2K(41.6); units.temp.tR = 'K'; label.temp.tR = 'temperature';
data.am = 17*365; units.am = 'd'; label.am = 'life span'; bibkey.am = 'AnAge';
temp.am = C2K(41.6); units.temp.am = 'K'; label.temp.am = 'temperature';
data.Wwb = 6.4; units.Wwb = 'g'; label.Wwb = 'wet weight at birth'; bibkey.Wwb = 'Brub1988';
data.Wwi = 75.5; units.Wwi = 'g'; label.Wwi = 'ultimate wet weight'; bibkey.Wwi = 'AnAge';
data.Ri = 6/365; units.Ri = '#/d'; label.Ri = 'maximum reprod rate'; bibkey.Ri = 'AnAge';
temp.Ri = C2K(41.6); units.temp.Ri = 'K'; label.temp.Ri = 'temperature';
comment.Ri = '2 clutches per yr, 3 eggs per clutch';
% uni-variate data
% time-weight
data.tW = [ ... % time since birth (d), wet weight (g)
0.043 6.364
0.995 10.288
2.029 15.682
6.029 39.825
8.982 55.271
9.951 58.828
12.932 64.973];
units.tW = {'d', 'g'}; label.tW = {'time since birth', 'wet weight'};
temp.tW = C2K(41.6); units.temp.tW = 'K'; label.temp.tW = 'temperature';
bibkey.tW = 'Brub1988';
%% set weights for all real data
weights = setweights(data, []);
weights.tW = weights.tW * 2;
%% set pseudodata and respective weights
[data, units, label, weights] = addpseudodata(data, units, label, weights);
weights.psd.k_J = 0; weights.psd.k = 1;
%% pack auxData and txtData for output
auxData.temp = temp;
txtData.units = units;
txtData.label = label;
txtData.bibkey = bibkey;
txtData.comment = comment;
%% Discussion points
D1 = 'mod_1: v is reduced';
D2 = 'mod_2: Pseudo-data point k is used, rather than k_J; Data set tp and parameter t_R are added, the latter replacing clutch interval t_N. Postnatal T is based on PrinPres1991, see get_T_Aves. See further the revision page, theme puberty';
metaData.discussion = struct('D1',D1, 'D2',D2);
%% Links
metaData.links.id_CoL = '59PMB'; % Cat of Life
metaData.links.id_ITIS = '179759'; % ITIS
metaData.links.id_EoL = '45510233'; % Ency of Life
metaData.links.id_Wiki = 'Turdus_migratorius'; % Wikipedia
metaData.links.id_ADW = 'Turdus_migratorius'; % ADW
metaData.links.id_Taxo = '57003'; % Taxonomicon
metaData.links.id_WoRMS = '1451661'; % WoRMS
metaData.links.id_avibase = 'D77E4B418D581FB2'; % avibase
metaData.links.id_birdlife = 'american-robin-turdus-migratorius'; % birdlife
metaData.links.id_AnAge = 'Turdus_migratorius'; % AnAge
%% References
bibkey = 'Wiki'; type = 'Misc'; bib = ...
'howpublished = {\url{http://en.wikipedia.org/wiki/Turdus_migratorius}}';
metaData.biblist.(bibkey) = ['''@', type, '{', bibkey, ', ' bib, '}'';'];
%
bibkey = 'Kooy2010'; type = 'Book'; bib = [ ... % used in setting of chemical parameters and pseudodata
'author = {Kooijman, S.A.L.M.}, ' ...
'year = {2010}, ' ...
'title = {Dynamic Energy Budget theory for metabolic organisation}, ' ...
'publisher = {Cambridge Univ. Press, Cambridge}, ' ...
'pages = {Table 4.2 (page 150), 8.1 (page 300)}, ' ...
'howpublished = {\url{../../../bib/Kooy2010.html}}'];
metaData.biblist.(bibkey) = ['''@', type, '{', bibkey, ', ' bib, '}'';'];
%
bibkey = 'AnAge'; type = 'Misc'; bib = ...
'howpublished = {\url{http://genomics.senescence.info/species/entry.php?species=Turdus_migratorius}}';
metaData.biblist.(bibkey) = ['''@', type, '{', bibkey, ', ' bib, '}'';'];
%
bibkey = 'Brub1988'; type = 'Techreport'; bib = [ ...
'title = {Passerine nesting and growths curves in Northwest Alaska}, ' ...
'institution = {Selawik National Wildlife Refuge}, ' ...
'year = {1988}, ' ...
'author = {R. Brubaker}, ' ...
'number = {FY88-2}, ' ...
'howpublished = {\url{https://catalog.data.gov/dataset/passerine-nesting-and-growth-curves-in-northwest-alaska}}, ' ...
'address = {Wittenberg Lutherstadt}'];
metaData.biblist.(bibkey) = ['''@', type, '{', bibkey, ', ' bib, '}'';'];
%
bibkey = 'PrinPres1991'; type = 'Article'; bib = [ ...
'doi = {10.1016/0300-9629(91)90122-S}, ' ...
'author = {R. Prinzinger and A.Pre{\ss}mar and E. Schleucher}, ' ...
'year = {1991}, ' ...
'title = {Body temperature in birds}, ' ...
'journal = {Comp. Biochem. Physiol.}, ' ...
'volume = {99A(4)}, ' ...
'pages = {499-506}'];
metaData.biblist.(bibkey) = ['''@', type, '{', bibkey, ', ' bib, '}'';'];